Google Summer of Code Ideas - Revision history

Senes: /* Developing a website to run MSL applications */

2013-04-02T18:28:16Z

‎Developing a website to run MSL applications

2013-04-02T18:22:46Z

‎Current development

2013-04-02T18:21:50Z

‎Goal

2013-04-01T22:38:25Z

2013-04-01T22:38:07Z

2013-04-01T22:36:57Z

2013-04-01T19:04:37Z

2013-04-01T18:53:21Z

2013-04-01T18:52:18Z

2013-04-01T18:43:10Z

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 Scripting Languages and Web Design
 ==Contact==
 Please email '''sabareeshs@gmail.com''' if you are interested in working on any of these ideas and would like to obtain more information.

← Older revision		Revision as of 18:22, 2 April 2013
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−	There are a number of areas, listed below, in which a GSoC ~~student~~ could contribute to realize these goals.	+	There are a number of areas, listed below, in which GSoC students of different background and skills could contribute to realize these goals.
−
−

	== Ideas ==		== Ideas ==

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 ==Goal==
-The goal of MSL is to be an efficient toolbox to enable a programmer to design powerful and advanced applications for molecular analysis, modeling, prediction and design.  At the same time, MSL is designed to also allow the rapid creation of applications that perform simple tasks (for example, measuring the distance between two atoms).
+The goal of MSL is to be an efficient toolbox to enable a programmer to design powerful and advanced applications for molecular analysis, modeling, prediction and design.  At the same time, MSL is designed with simplicity in mind to also allow the rapid creation of applications that perform simple tasks (for example, measuring the distance between two atoms).
 ==History==

@@ Line 8: / Line 8: @@
 ==Goal==
-The goal of MSL is to be an efficient toolbox to enable a programmer to design powerful and advanced applications for molecular analysis, modeling, prediction and design.  At the same time, MSL should also allow the rapid creation of applications that perform simple tasks (for example, measuring the distance between two atoms).
+The goal of MSL is to be an efficient toolbox to enable a programmer to design powerful and advanced applications for molecular analysis, modeling, prediction and design.  At the same time, MSL is designed to also allow the rapid creation of applications that perform simple tasks (for example, measuring the distance between two atoms).
 ==History==

@@ Line 8: / Line 8: @@
 ==Goal==
-The goal of MSL is to create a toolbox to enable a programmer to design powerful and advanced applications for molecular analysis, modeling, prediction and design.  At the same time, MSL should also allow the rapid creation of applications that perform simple tasks (for example, measuring the distance between two atoms).
+The goal of MSL is to be an efficient toolbox to enable a programmer to design powerful and advanced applications for molecular analysis, modeling, prediction and design.  At the same time, MSL should also allow the rapid creation of applications that perform simple tasks (for example, measuring the distance between two atoms).
 ==History==

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 '''MSL (Molecular Software Libraries)''' is an open source C++ library of objects related to macromolecular modeling.
 [[File:Msl_hierarchy.png | frame | Hierarchy of molecular objects in MSL ([http://www.ncbi.nlm.nih.gov/pubmed/22565567 Kulp et al. 2012])]]
-[[File:FtsB.png | frame | Structural model of a dimer of a membrane protein obtained with MSL ([http://www.ncbi.nlm.nih.gov/pubmed/23520975 LaPointe et al. 2013])]]
+[[File:FtsB.png | frame | Structural model of a membrane protein obtained with MSL ([http://www.ncbi.nlm.nih.gov/pubmed/23520975 LaPointe et al. 2013])]]
 [[File:side_chains.png | frame | A unique feature of MSL is that it can hold multiple type of side-chain types (c, d) and/or multiple conformations of the side-chain (a, b) at the same position in a protein ([http://www.ncbi.nlm.nih.gov/pubmed/22565567 Kulp et al. 2012])]]
 [[File:TRP_EBL.png | frame | A library of side chain conformations created with MSL ([http://www.ncbi.nlm.nih.gov/pubmed/22576292 Subramaniam et. al Proteins 2012])]]

@@ Line 1: / Line 1: @@
 '''MSL (Molecular Software Libraries)''' is an open source C++ library of objects related to macromolecular modeling.
-[[File:Msl_hierarchy.png | frame | '''MSL OBJECT HIERARCHY''']]
+[[File:Msl_hierarchy.png | frame | '''Hierarchy of molecular objects in MSL''']]
 [[File:FtsB.png | frame | '''Structural model of a dimer of a membrane protein obtained with MSL''']]
 [[File:side_chains.png | frame | '''A unique feature of MSL is that it can hold multiple type of side-chain types (c, d) and/or multiple conformations of the side-chain (a, b) at the same position in a protein''']]

@@ Line 18: / Line 18: @@
 MSL has been extensively used in scientific publications encompassing a variety of applications. For example,  [http://senes.biochem.wisc.edu/pdf/FtsBdimer-preprint.pdf protein structure prediction], [http://www.ncbi.nlm.nih.gov/pubmed/23422424 protein design], [http://www.ncbi.nlm.nih.gov/pubmed/23089864 protein engineering] and [http://senes.biochem.wisc.edu/pdf/EBL-2012-Proteins.pdf modeling algorithms/methods], and others.
-==Current development==
+[[File:FtsB.png | frame | '''Structural model of a dimer of a membrane protein obtained with MSL''']]
-The main theme of MSL development will continue to be the creation of a flexible yet powerful software framework that is easily accessible to programmers familiar with C++/object-orientation.  We are striving to improve the core framework through
+We are striving to improve the core framework through
 * more advanced objects
 * more efficient implementations
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 There are a number of areas, listed below, in which a GSoC student could contribute to realize these goals.
 == Ideas ==