MSL Programs:getSelection - Revision history

Dwkulp at 04:55, 26 February 2010

2010-02-26T04:55:00Z

Dwkulp at 04:54, 26 February 2010

2010-02-26T04:54:43Z

Senes at 22:12, 16 February 2010

2010-02-16T22:12:12Z

Senes at 16:42, 16 February 2010

2010-02-16T16:42:44Z

Dwkulp: /* Options */

2010-02-16T16:35:31Z

‎Options

Senes: Created page with '==getSelection== A simple program to take a protein structure file and execute MSL selections (very similar in structure to PyMOL selections). ==Options== --pdb Protein…'

2010-02-16T16:15:45Z

Created page with '==getSelection== A simple program to take a protein structure file and execute MSL selections (very similar in structure to PyMOL selections). ==Options== --pdb Protein…'

New page

==getSelection==

A simple program to take a protein structure file and execute MSL selections (very similar in structure to PyMOL selections).

==Options==
--pdb Protein structure file
--resSel Use ResidueSelection object, properties of Residue objects (resi,resn,chain)
--atomSel Use AtomSelection object, properties of Atom objects (name,resi,resn,chain)
--outPdb Output matched selection in form of a pdb structure file
--sequence Output matched selection in form of 1 letter Amino Acid code string

==Examples==

MSL_Programs:GetSelection

@@ Line 12: / Line 12: @@
 ==Examples==
-getSelection --pdb 1ENV.pdb --atomSel "chain A and name CA"
+ getSelection --pdb 1ENV.pdb --atomSel "chain A and name CA"
-getSelection --pdb 1ENV.pdb --atomSel "(chain A and (resi 4-16 and name CA))"
+ getSelection --pdb 1ENV.pdb --atomSel "(chain A and (resi 4-16 and name CA))"
 ==Source from SourceForge==

← Older revision		Revision as of 04:54, 26 February 2010
Line 12:		Line 12:
	==Examples==		==Examples==

		+	getSelection --pdb 1ENV.pdb --atomSel "chain A and name CA"
		+	getSelection --pdb 1ENV.pdb --atomSel "(chain A and (resi 4-16 and name CA))"

	==Source from SourceForge==		==Source from SourceForge==

← Older revision		Revision as of 22:12, 16 February 2010
Line 13:		Line 13:


−	====Source from SourceForge====	+	==Source from SourceForge==

	[http://mslib.svn.sourceforge.net/viewvc/mslib/trunk/programs/getSelection.h?&view=markup getSelection.h]		[http://mslib.svn.sourceforge.net/viewvc/mslib/trunk/programs/getSelection.h?&view=markup getSelection.h]

← Older revision		Revision as of 16:42, 16 February 2010
Line 12:		Line 12:
	==Examples==		==Examples==

−	~~MSL_Programs~~:~~GetSelection~~	+
		+	====Source from SourceForge====
		+
		+	[http://mslib.svn.sourceforge.net/viewvc/mslib/trunk/programs/getSelection.h?&view=markup getSelection.h]
		+
		+	[http://mslib.svn.sourceforge.net/viewvc/mslib/trunk/programs/getSelection.cpp?&view=markup getSelection.cpp]
		+
		+	----
		+
		+	[[Documentation\|Documentation index]]

@@ Line 4: / Line 4: @@
 ==Options==
---pdb         Protein structure file
+ --pdb         Protein structure file
---resSel      Use ResidueSelection object, properties of Residue objects (resi,resn,chain)
+ --resSel      Use ResidueSelection object, properties of Residue objects (resi,resn,chain)
---atomSel     Use AtomSelection object, properties of Atom objects (name,resi,resn,chain)
+ --atomSel     Use AtomSelection object, properties of Atom objects (name,resi,resn,chain)
---outPdb      Output matched selection in form of a pdb structure file
+ --outPdb      Output matched selection in form of a pdb structure file
---sequence    Output matched selection in form of 1 letter Amino Acid code string
+ --sequence    Output matched selection in form of 1 letter Amino Acid code string
 ==Examples==
 MSL_Programs:GetSelection